Notes to Developers¶
Here you can find notes on design principles and how to contribute to AvaFrame.
First a few general remarks. We are aware there’s no right or wrong here, we decided to stick to a few principles. If you contribute code, please try to observe these:
- AF-DESIGN-1: Use SI units
Units in APIs should be SI units: seconds, meters, etc.
- AF-STYLE-1: Line length
If you want a guide for line length — we think line breaking at 120 characters makes more sense than line breaking at 80.
- AF-STYLE-2: Naming
Use short, but descriptive enough names for variables. Use longer descriptive names for things with bigger scopes (functions, modules). Main theme: as short as possible, but as long as necessary.
Please use lowerCamelCase (e.g.: myFancyVariable) for naming, avoid underscores.
- AF-STYLE-3: Commenting
Exposed API functions need documentation comments, most importantly a docstring, other code only needs to be commented as necessary. Write your code clearly and use sensible names to reduce the need for comments.
- AF-STYLE-4: No dead code
Unused code, commented out code, functions that are never called, etc, should be removed from the project to reduce the cognitive load of reading the source code. Old code is available in the source history if it is needed.
Our suggested git workflow¶
git clone https://github.com/avaframe/AvaFrame.git
Clones the repository to your local machine into the directory AvaFrame. Sets the repository to track to origin
git checkout -b myAwesomeFeature
This changes your working directory to the myAwesomeFeature branch. Try to keep any changes in this branch specific to one bug or feature. You can have many branches and switch in between them using the git checkout command.
Work on it and from time to time commit your changes using following commands as necessary:
git add git commit
To update this branch, you need to retrieve the changes from the master branch:
git rebase origin master
git checkout master git pull git checkout myAwesomeFeature git rebase master
This replays all your changes on the current status of the master (i.e main) branch. If conflicts arise, now is the time to solve them.
Push your changes to the main repository:
git push origin
Once you feel you are done, start a pull request on github.com.
Pull requests are reviewed and handled. Once the pull request is included into the master, the local myAwesomeFeature branch can be deleted (the one in the main repository/origin will be handled by the pull request):
git checkout master git branch -d myAwesomeFeature
Build the documentation¶
If you want to work on the documentation you need to install Sphinx. If you have followed the conda installation using
avaframe_env_spec.txt, you can omit the following steps. If not, you can install Sphinx, the ReadTheDocs
theme, and the sphinxcontrib-bibtex, which we use to include references, by running:
pip install sphinx pip install sphinx-rtd-theme pip install sphinxcontrib-bibtex
In order to build the documentation you need to install make
sudo apt install make
Then go to the
docs\ directory and run:
Html files of the documentation can be found in the _build directory.
How to test code¶
AvaFrame uses pytest to test code. If you add new code, consider including a
pytest for it in
Avaframe/avaframe/tests/. In order to perform the pytests, just run:
and you should see something like:
===========================test session starts ====================== platform linux -- Python 3.8.3, pytest-5.4.3, py-1.9.0, pluggy-0.13.1 collected 1 item tests/test_tmp1Ex.py . [100%] ==========================1 passed in 0.02s =========================
How to add a benchmark test¶
AvaFrame offers an expanding benchmark test suite. At the moment this test suite
includes avalanche simulations for various idealised topographies. The
runStandardTestsCom1DFA.py facilitates running all the available benchmark tests
for com1DFA at once. With this script, the avalanche simulations are performed,
plotted and a report of the comparison between simulation results and the benchmark data is
generated. If you plan to add a new benchmark test case, follow these steps
first chose a name, we suggest to start it with
ava(for now let’s refer to it as
add all the required input data in
data/NameOfAvalanche. Follow the required directory structure which can be generated using: Initialize Project
as a next step, you need to add the benchmark results:
AvaFrame/benchmarksand add the subdirectory named after your test name
add benchmark data i.e. peak values of result parameters as ascii files. This data will be used as reference for the new test!
add the configuration file as
add a json file with required info on benchmark test - you can use the example provided in
AvaFrame/benchmarks/simParametersDict.pyand add a simulation dictionary that contains all the info on the new benchmark
Now, you are ready to go! Move to
AvaFrame/avaframe and run:
You can check out the markdown-style report of the comparison at:
runScripts we provide ready-to-use scripts for different applications of the modules provided within
Derive input data¶
Create a new project¶
Generate idealized/generic topography data¶